Publications by Subject 
(Chronological order)
Network growth models and applications:
Z. M. Saul, S. Roy, R. M. D'Souza, P. T. Devanbu, V. Filkov, "Graphlet Arrival: Modeling and verifying a broad array of network properties", (arXiv:0805.1489).
H. R. Wen, R. M. D'Souza, Z. M. Saul, and V. Filkov, "Evolution of Apache Open Source Software", in Dynamics On and Of Complex Networks, Birkhauser, Springer. In press, 2008.
R. M. D'Souza, P. L. Krapivsky, C. Moore, "The power of choice in growing trees", European Physical Journal B, 59 (4), 535-543, 2007.
R. M. D'Souza, C. Borgs, J. T. Chayes, N. Berger, and R. Kleinberg,
"Emergence of Tempered Preferential Attachment From Optimization", Proc. of the Natn. Acad. of Sciences (PNAS), 104 (15), 6112-6117, 2007, (Cover Story). Accompanying UCDavis press release.
R. M. D'Souza, C. Borgs, J. T. Chayes, N. Berger, and R. Kleinberg, "Fitting the WHOIS Internet data", Supporting Information to article above. Also available as arXiv:cs/0701198v1.
R. M. D'Souza, D. Galvin, C. Moore, and D. Randall,
"Global connectivity from local geometric constraints for sensor networks with various wireless footprints", Proceedings of The Fifth International Conference on Information Processing in Sensor Networks (IPSN) 2006.
N. Berger, C. Borgs, J. T. Chayes, R. M. D'Souza, and
R. D. Kleinberg. "Degree Distribution of Competition-Induced
Preferential Attachment Graphs", Combinatorics, Probability and
Computing 14 (5-6), 697-721, 2005.
N. Berger, C. Borgs, J. T. Chayes, R. M. D'Souza, and
R. D. Kleinberg. "Competition-Induced Preferential Attachment", Lecture Notes in Computer Science (ICALP 2004) 3142 208-221, 2004.
R. M. D'Souza, S. Ramanathan, and D. Temple Lang. "Measuring performance of ad hoc networks using timescales for
information flow", in Proceedings of IEEE, INFOCOM 2003.
Phase transitions, statistical physics and computational physics:
N. J. Linesch and R. M. D'Souza, "Periodic States, Local Effects and Coexistence in the BML Traffic Jam Model", arXiv:0709.3604.
R. M. D'Souza, "BML revisited: Statistical physics, computer simulation and probability", Complexity, 12, (2), 30-39, 2006.
R. M. D'Souza, "Coexisting phases and lattice dependence
of a cellular automata model for traffic flow", Physical Review E, Volume 71, 066112, 2005.
R. M. D'Souza, N. H. Margolus, and M. A. Smith.
"Dimension-splitting for simplifying lattice-gas models of
diffusion", Journal of Statistical Physics, 107 (1),
2002.
R. M. D'Souza, Y. Bar-Yam, and M. Kardar. "Sensitivity
of Ballistic Deposition to Pseudorandom Number Generators", Physical Review E 57 (5), 1998.
R. M. D'Souza. "Anomalies in Simulations of Nearest
Neighbor Ballistic Deposition", Int. Jour. of Modern Physics C
8 941, 1997.
Thermodynamics and Computation:
R. M. D'Souza, G. E. Homsy, and N. H. Margolus.
"Simulating digital logic with the Reversible Aggregation model of cluster growth", in New Constructions in Cellular Automata,
Oxford University Press, 2003.
R. M. D'Souza and N. H. Margolus. "Thermodynamically
reversible generalization of Diffusion Limited Aggregation", Physical Review E 60 (1), 1999. A quicktime movie of RA growth.
R. M. D'Souza. "Macroscopic order from reversible and
stochastic lattice growth models", PhD Thesis, MIT, 1999.
Transportation:
Julia Silvis, Deb Niemeier, and Raissa D'Souza "Social Networks and Travel Behavior: Report from an integrated travel diary", Proceedings of The 11th International Conference on Travel Behaviour Research, Kyoto, Japan, August 2006.
Experimental Atomic Physics (i.e., past life: Summer Internships, Bell Laboratories).
A. A. MacDowell, et al., "Soft-X-Ray Projection
Imaging with a 1/1 Ring-Field Optic", Applied Optics 32
(34), 1993.
J. M. Calvert, et al., "Projection x-ray lithography with ultrathin imaging layers and selective electroless metallization", Optical Engineering 32 (10), 2437-2445, 1993.
J. M. Calvert, et al., "Soft x-ray (14 nm) lithography with ultrathin imaging layers and selective electroless metallization", Proc. SPIE 1924, 30-41, 1993.
D. M. Tennant, et al., "Reflective mask technologies and imaging results in soft x-ray projection lithography", Journal of Vacuum Science & Technology B 9 (6) 3176-3183, 1991.
W. M. Mansfield, et al., "Effects of Absorption on
Resist Performance in Soft X-Ray Projection Lithography", OSA
Proceedings on Soft X-Ray Projection Lithography 12, 1991.
